Detailed information of SNP:
|
SNP ID:
sf1112491591(Gbrowse)
Chromosome: chr11 Position: 12491591 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 95.57% | 4.43% |
| All Indica | 765 | 94.51% | 5.49% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 39 | 79.49% | 20.51% |
| Indica I | 364 | 98.35% | 1.65% |
| Indica II | 200 | 87.00% | 13.00% |
| Indica Intermediate | 201 | 95.02% | 4.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112491591 | G->A | LOC_Os11g22540(LOC_Os11g22540.1) | INTRON |