Detailed information of SNP:
|
SNP ID:
sf1112499391(Gbrowse)
Chromosome: chr11 Position: 12499391 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 90.37% | 9.63% |
| All Indica | 743 | 84.12% | 15.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 357 | 85.71% | 14.29% |
| Indica II | 196 | 82.65% | 17.35% |
| Indica Intermediate | 190 | 82.63% | 17.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112499391 | C->A | INTERGENIC | None |