Detailed information of SNP:
|
SNP ID:
sf1112500699(Gbrowse)
Chromosome: chr11 Position: 12500699 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 52.35% | 47.65% |
| All Indica | 767 | 80.83% | 19.17% |
| All Japonica | 495 | 2.83% | 97.17% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 356 | 77.53% | 22.47% |
| Indica II | 204 | 80.39% | 19.61% |
| Indica Intermediate | 207 | 86.96% | 13.04% |
| Temperate Japonica | 333 | 3.90% | 96.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112500699 | A->G | INTERGENIC | None |