Detailed information of SNP:
|
SNP ID:
sf1112502639(Gbrowse)
Chromosome: chr11 Position: 12502639 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 61.09% | 38.91% |
| All Indica | 736 | 32.47% | 67.53% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 337 | 27.30% | 72.70% |
| Indica II | 198 | 32.32% | 67.68% |
| Indica Intermediate | 201 | 41.29% | 58.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112502639 | G->A | LOC_Os11g22550(LOC_Os11g22550.1) | INTRON |