Detailed information of SNP:
|
SNP ID:
sf1112504032(Gbrowse)
Chromosome: chr11 Position: 12504032 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 96.62% | 3.38% |
| All Indica | 772 | 94.04% | 5.96% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 361 | 96.95% | 3.05% |
| Indica II | 206 | 91.75% | 8.25% |
| Indica Intermediate | 205 | 91.22% | 8.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112504032 | A->G | LOC_Os11g22550(LOC_Os11g22550.1) | INTRON |