Detailed information of SNP:
|
SNP ID:
sf1112505994(Gbrowse)
Chromosome: chr11 Position: 12505994 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1294 | 92.74% | 7.26% |
| All Indica | 678 | 87.02% | 12.98% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 315 | 89.52% | 10.48% |
| Indica II | 177 | 82.49% | 17.51% |
| Indica Intermediate | 186 | 87.10% | 12.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112505994 | C->T | LOC_Os11g22550(LOC_Os11g22550.1) | INTRON |
| sf1112505994 | C->T | LOC_Os11g22550(LOC_Os11g22550.1) | SNPs that disrupt splice sites |