Detailed information of SNP:
|
SNP ID:
sf1112507326(Gbrowse)
Chromosome: chr11 Position: 12507326 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 95.19% | 4.81% |
| All Indica | 774 | 91.60% | 8.40% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 89.39% | 10.61% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 204 | 91.18% | 8.82% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112507326 | C->G | LOC_Os11g22560(LOC_Os11g22560.1) | Non-Synonymous SNP |