Detailed information of SNP:
|
SNP ID:
sf1112515728(Gbrowse)
Chromosome: chr11 Position: 12515728 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 50.33% | 49.67% |
| All Indica | 765 | 15.56% | 84.44% |
| All Japonica | 492 | 99.19% | 0.81% |
| Aus | 62 | 77.42% | 22.58% |
| Indica I | 362 | 14.09% | 85.91% |
| Indica II | 206 | 8.25% | 91.75% |
| Indica Intermediate | 197 | 25.89% | 74.11% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112515728 | C->T | LOC_Os11g22570(LOC_Os11g22570.1) | INTRON |