Detailed information of SNP:



SNP ID: sf1112517909(Gbrowse)

Chromosome: chr11

Position: 12517909
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1393 97.42% 2.58%
All Indica774 95.48% 4.52%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I364 95.88% 4.12%
Indica II206 94.66% 5.34%
Indica Intermediate204 95.59% 4.41%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 97.56% 2.44%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1112517909 G->A LOC_Os11g22570(LOC_Os11g22570.1) Non-Synonymous SNP