Detailed information of SNP:
|
SNP ID:
sf1112519528(Gbrowse)
Chromosome: chr11 Position: 12519528 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1344 | 86.90% | 13.10% |
| All Indica | 728 | 77.88% | 22.12% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 347 | 82.13% | 17.87% |
| Indica II | 184 | 72.28% | 27.72% |
| Indica Intermediate | 197 | 75.63% | 24.37% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112519528 | G->A | LOC_Os11g22570(LOC_Os11g22570.1) | INTRON |