Detailed information of SNP:
|
SNP ID:
sf1112520281(Gbrowse)
Chromosome: chr11 Position: 12520281 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 79.97% | 20.03% |
| All Indica | 781 | 74.01% | 25.99% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 368 | 77.45% | 22.55% |
| Indica II | 206 | 76.21% | 23.79% |
| Indica Intermediate | 207 | 65.70% | 34.30% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112520281 | C->A | LOC_Os11g22570(LOC_Os11g22570.1) | INTRON |