Detailed information of SNP:
|
SNP ID:
sf1112524798(Gbrowse)
Chromosome: chr11 Position: 12524798 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 98.48% | 1.52% |
| All Indica | 794 | 100.00% | 0.00% |
| All Japonica | 469 | 95.74% | 4.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 319 | 94.04% | 5.96% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 98.33% | 1.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112524798 | A->T | LOC_Os11g22580(LOC_Os11g22580.1) | INTRON |