Detailed information of SNP:
|
SNP ID:
sf1112525783(Gbrowse)
Chromosome: chr11 Position: 12525783 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 96.76% | 3.24% |
| All Indica | 768 | 94.53% | 5.47% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 355 | 90.99% | 9.01% |
| Indica II | 207 | 97.58% | 2.42% |
| Indica Intermediate | 206 | 97.57% | 2.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112525783 | A->T | LOC_Os11g22580(LOC_Os11g22580.1) | INTRON |