Detailed information of SNP:
|
SNP ID:
sf1112526622(Gbrowse)
Chromosome: chr11 Position: 12526622 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 91.11% | 8.89% |
| All Indica | 798 | 90.98% | 9.02% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112526622 | C->T | LOC_Os11g22580(LOC_Os11g22580.1) | Non-Synonymous SNP |