Detailed information of SNP:
|
SNP ID:
sf1112540902(Gbrowse)
Chromosome: chr11 Position: 12540902 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1355 | 80.07% | 19.93% |
| All Indica | 738 | 73.04% | 26.96% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 358 | 79.05% | 20.95% |
| Indica II | 183 | 80.33% | 19.67% |
| Indica Intermediate | 197 | 55.33% | 44.67% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112540902 | A->G | LOC_Os11g22610(LOC_Os11g22610.1) | INTRON |