Detailed information of SNP:
|
SNP ID:
sf1112565643(Gbrowse)
Chromosome: chr11 Position: 12565643 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1363 | 95.74% | 4.26% |
| All Indica | 762 | 95.14% | 4.86% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 52 | 65.38% | 34.62% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 186 | 88.71% | 11.29% |
| Indica Intermediate | 202 | 96.04% | 3.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112565643 | A->C | INTERGENIC | None |