Detailed information of SNP:
|
SNP ID:
sf1112580719(Gbrowse)
Chromosome: chr11 Position: 12580719 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 88.78% | 11.22% |
| All Indica | 765 | 82.22% | 17.78% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 366 | 84.15% | 15.85% |
| Indica II | 203 | 76.85% | 23.15% |
| Indica Intermediate | 196 | 84.18% | 15.82% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112580719 | G->A | LOC_Os11g22670(LOC_Os11g22670.1) | Non-Synonymous SNP |