Detailed information of SNP:
|
SNP ID:
sf1112612064(Gbrowse)
Chromosome: chr11 Position: 12612064 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 93.67% | 6.33% |
| All Indica | 762 | 89.37% | 10.63% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 63 | 95.24% | 4.76% |
| Indica I | 359 | 89.69% | 10.31% |
| Indica II | 201 | 89.05% | 10.95% |
| Indica Intermediate | 202 | 89.11% | 10.89% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112612064 | C->A | INTERGENIC | None |