Detailed information of SNP:
|
SNP ID:
sf1112617015(Gbrowse)
Chromosome: chr11 Position: 12617015 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 64.08% | 35.92% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 496 | 5.24% | 94.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112617015 | T->C | LOC_Os11g22740(LOC_Os11g22740.1) | INTRON |