Detailed information of SNP:
|
SNP ID:
sf1112664046(Gbrowse)
Chromosome: chr11 Position: 12664046 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1335 | 87.49% | 12.51% |
| All Indica | 718 | 77.58% | 22.42% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 325 | 69.23% | 30.77% |
| Indica II | 198 | 93.94% | 6.06% |
| Indica Intermediate | 195 | 74.87% | 25.13% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112664046 | G->A | INTERGENIC | None |