Detailed information of SNP:
|
SNP ID:
sf1112684931(Gbrowse)
Chromosome: chr11 Position: 12684931 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1325 | 83.02% | 16.98% |
| All Indica | 712 | 70.08% | 29.92% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 324 | 60.49% | 39.51% |
| Indica II | 199 | 80.40% | 19.60% |
| Indica Intermediate | 189 | 75.66% | 24.34% |
| Temperate Japonica | 332 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112684931 | C->T | LOC_Os11g22850(LOC_Os11g22850.1) | INTRON |