Detailed information of SNP:
|
SNP ID:
sf1112775355(Gbrowse)
Chromosome: chr11 Position: 12775355 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 51.32% | 48.68% |
| All Indica | 759 | 20.55% | 79.45% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 49 | 59.18% | 40.82% |
| Indica I | 360 | 7.50% | 92.50% |
| Indica II | 200 | 40.50% | 59.50% |
| Indica Intermediate | 199 | 24.12% | 75.88% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112775355 | T->C | LOC_Os11g23020(LOC_Os11g23020.1) | Synonymous |