Detailed information of SNP:



SNP ID: sf1112777324(Gbrowse)

Chromosome: chr11

Position: 12777324
Major allele: G

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1414 61.46% 38.54%
All Indica795 94.97% 5.03%
All Japonica497 3.82% 96.18%
Aus67 98.51% 1.49%
Indica I373 97.32% 2.68%
Indica II212 88.21% 11.79%
Indica Intermediate210 97.62% 2.38%
Temperate Japonica335 4.78% 95.22%
Tropical Japonica94 2.13% 97.87%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 14.29% 85.71%
Intermediate41 65.85% 34.15%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1112777324 T->G INTERGENIC None