Detailed information of SNP:
|
SNP ID:
sf1112880407(Gbrowse)
Chromosome: chr11 Position: 12880407 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 59.12% | 40.88% |
| All Indica | 797 | 91.84% | 8.16% |
| All Japonica | 496 | 2.82% | 97.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 86.33% | 13.67% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112880407 | T->C | INTERGENIC | None |