Detailed information of SNP:
|
SNP ID:
sf1112892892(Gbrowse)
Chromosome: chr11 Position: 12892892 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1361 | 90.08% | 9.92% |
| All Indica | 745 | 82.01% | 17.99% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 348 | 75.00% | 25.00% |
| Indica II | 201 | 92.54% | 7.46% |
| Indica Intermediate | 196 | 83.67% | 16.33% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112892892 | T->C | LOC_Os11g23200(LOC_Os11g23200.1) | INTRON |