Detailed information of SNP:
|
SNP ID:
sf1112965328(Gbrowse)
Chromosome: chr11 Position: 12965328 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 90.92% | 9.08% |
| All Indica | 781 | 86.17% | 13.83% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 198 | 69.19% | 30.81% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112965328 | G->A | LOC_Os11g23750(LOC_Os11g23750.1) | INTRON |