Detailed information of SNP:
|
SNP ID:
sf1112977638(Gbrowse)
Chromosome: chr11 Position: 12977638 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 94.37% | 5.63% |
| All Indica | 788 | 91.75% | 8.25% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 367 | 92.10% | 7.90% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1112977638 | T->C | LOC_Os11g23760(LOC_Os11g23760.1) | Synonymous |