Detailed information of SNP:
|
SNP ID:
sf1113013837(Gbrowse)
Chromosome: chr11 Position: 13013837 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1327 | 92.61% | 7.39% |
| All Indica | 726 | 88.84% | 11.16% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 53 | 81.13% | 18.87% |
| Indica I | 347 | 92.51% | 7.49% |
| Indica II | 194 | 84.02% | 15.98% |
| Indica Intermediate | 185 | 87.03% | 12.97% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113013837 | A->G | LOC_Os11g23810(LOC_Os11g23810.1) | Synonymous |