Detailed information of SNP:
|
SNP ID:
sf1113066427(Gbrowse)
Chromosome: chr11 Position: 13066427 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 98.02% | 1.98% |
| All Indica | 780 | 97.82% | 2.18% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 38 | 84.21% | 15.79% |
| Indica I | 370 | 98.65% | 1.35% |
| Indica II | 206 | 98.06% | 1.94% |
| Indica Intermediate | 204 | 96.08% | 3.92% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113066427 | A->G | INTERGENIC | None |