Detailed information of SNP:
|
SNP ID:
sf1113108494(Gbrowse)
Chromosome: chr11 Position: 13108494 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 90.34% | 9.66% |
| All Indica | 774 | 85.01% | 14.99% |
| All Japonica | 493 | 98.58% | 1.42% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 359 | 75.49% | 24.51% |
| Indica II | 209 | 97.13% | 2.87% |
| Indica Intermediate | 206 | 89.32% | 10.68% |
| Temperate Japonica | 331 | 97.89% | 2.11% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113108494 | G->T | LOC_Os11g23960(LOC_Os11g23960.1) | INTRON |