Detailed information of SNP:
|
SNP ID:
sf1113133575(Gbrowse)
Chromosome: chr11 Position: 13133575 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 96.92% | 3.08% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 477 | 91.19% | 8.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 87.00% | 13.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113133575 | G->A | LOC_Os11g23990(LOC_Os11g23990.1) | INTRON |