Detailed information of SNP:
|
SNP ID:
sf1113143010(Gbrowse)
Chromosome: chr11 Position: 13143010 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1165 | 77.68% | 22.32% |
| All Indica | 575 | 59.30% | 40.70% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 43 | 62.79% | 37.21% |
| Indica I | 279 | 62.37% | 37.63% |
| Indica II | 149 | 48.99% | 51.01% |
| Indica Intermediate | 147 | 63.95% | 36.05% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113143010 | C->A | LOC_Os11g24006(LOC_Os11g24006.1) | INTRON |