Detailed information of SNP:
|
SNP ID:
sf1113143770(Gbrowse)
Chromosome: chr11 Position: 13143770 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 54.96% | 45.04% |
| All Indica | 792 | 84.34% | 15.66% |
| All Japonica | 496 | 4.03% | 95.97% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 371 | 80.86% | 19.14% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 334 | 5.39% | 94.61% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113143770 | T->C | LOC_Os11g24006(LOC_Os11g24006.1) | Synonymous |