Detailed information of SNP:
|
SNP ID:
sf1113153811(Gbrowse)
Chromosome: chr11 Position: 13153811 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 63.17% | 36.83% |
| All Indica | 794 | 93.58% | 6.42% |
| All Japonica | 467 | 8.14% | 91.86% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 92.18% | 7.82% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 310 | 10.97% | 89.03% |
| Tropical Japonica | 90 | 3.33% | 96.67% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113153811 | A->G | INTERGENIC | None |