Detailed information of SNP:
|
SNP ID:
sf1113333951(Gbrowse)
Chromosome: chr11 Position: 13333951 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1317 | 70.08% | 29.92% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 401 | 10.47% | 89.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 271 | 14.39% | 85.61% |
| Tropical Japonica | 76 | 1.32% | 98.68% |
| Japonica Intermediate | 54 | 3.70% | 96.30% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113333951 | G->C | LOC_Os11g24230(LOC_Os11g24230.1) | INTRON |