Detailed information of SNP:
|
SNP ID:
sf1113396526(Gbrowse)
Chromosome: chr11 Position: 13396526 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1315 | 93.31% | 6.69% |
| All Indica | 731 | 89.60% | 10.40% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 39 | 87.18% | 12.82% |
| Indica I | 362 | 88.95% | 11.05% |
| Indica II | 185 | 89.73% | 10.27% |
| Indica Intermediate | 184 | 90.76% | 9.24% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113396526 | G->A | LOC_Os11g24330(LOC_Os11g24330.1) | Non-Synonymous SNP |