Detailed information of SNP:
|
SNP ID:
sf1113419154(Gbrowse)
Chromosome: chr11 Position: 13419154 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.16% | 45.84% |
| All Indica | 798 | 30.45% | 69.55% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 12.27% | 87.73% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 210 | 40.95% | 59.05% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113419154 | A->G | INTERGENIC | None |