Detailed information of SNP:
|
SNP ID:
sf1113448865(Gbrowse)
Chromosome: chr11 Position: 13448865 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 54.68% | 45.32% |
| All Indica | 756 | 85.58% | 14.42% |
| All Japonica | 493 | 2.64% | 97.36% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 342 | 84.50% | 15.50% |
| Indica II | 208 | 83.17% | 16.83% |
| Indica Intermediate | 206 | 89.81% | 10.19% |
| Temperate Japonica | 331 | 3.63% | 96.37% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113448865 | A->G | LOC_Os11g24374(LOC_Os11g24374.1) | INTRON |