Detailed information of SNP:



SNP ID: sf1113547212(Gbrowse)

Chromosome: chr11

Position: 13547212
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1415 96.61% 3.39%
All Indica795 99.87% 0.13%
All Japonica497 90.54% 9.46%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate207 99.52% 0.48%
Temperate Japonica335 98.21% 1.79%
Tropical Japonica94 59.57% 40.43%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1113547212 C->T INTERGENIC None