Detailed information of SNP:
SNP ID:
sf1113547212(Gbrowse)
Chromosome: chr11 Position: 13547212 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1415 | 96.61% | 3.39% |
All Indica | 795 | 99.87% | 0.13% |
All Japonica | 497 | 90.54% | 9.46% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 207 | 99.52% | 0.48% |
Temperate Japonica | 335 | 98.21% | 1.79% |
Tropical Japonica | 94 | 59.57% | 40.43% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1113547212 | C->T | INTERGENIC | None |