Detailed information of SNP:
|
SNP ID:
sf1113573534(Gbrowse)
Chromosome: chr11 Position: 13573534 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 61.80% | 38.20% |
| All Indica | 776 | 39.56% | 60.44% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 21.54% | 78.46% |
| Indica I | 372 | 36.29% | 63.71% |
| Indica II | 203 | 50.74% | 49.26% |
| Indica Intermediate | 201 | 34.33% | 65.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113573534 | G->T | INTERGENIC | None |