Detailed information of SNP:
|
SNP ID:
sf1113599925(Gbrowse)
Chromosome: chr11 Position: 13599925 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 59.78% | 40.22% |
| All Indica | 778 | 93.57% | 6.43% |
| All Japonica | 496 | 3.23% | 96.77% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 202 | 89.60% | 10.40% |
| Indica Intermediate | 201 | 88.06% | 11.94% |
| Temperate Japonica | 334 | 4.19% | 95.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113599925 | T->C | INTERGENIC | None |