Detailed information of SNP:
|
SNP ID:
sf1113689628(Gbrowse)
Chromosome: chr11 Position: 13689628 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 91.02% | 8.98% |
| All Indica | 777 | 92.15% | 7.85% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 64 | 20.31% | 79.69% |
| Indica I | 358 | 93.85% | 6.15% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113689628 | A->C | INTERGENIC | None |