Detailed information of SNP:
|
SNP ID:
sf1113734014(Gbrowse)
Chromosome: chr11 Position: 13734014 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 92.31% | 7.69% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 483 | 78.67% | 21.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 72.62% | 27.38% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 65 | 81.54% | 18.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113734014 | G->A | LOC_Os11g24930(LOC_Os11g24930.1) | Non-Synonymous SNP |