Detailed information of SNP:
|
SNP ID:
sf1113828383(Gbrowse)
Chromosome: chr11 Position: 13828383 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1325 | 95.70% | 4.30% |
| All Indica | 707 | 92.36% | 7.64% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 344 | 92.44% | 7.56% |
| Indica II | 175 | 92.00% | 8.00% |
| Indica Intermediate | 188 | 92.55% | 7.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113828383 | G->A | LOC_Os11g25070(LOC_Os11g25070.1) | INTRON |