Detailed information of SNP:
|
SNP ID:
sf1113946987(Gbrowse)
Chromosome: chr11 Position: 13946987 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1267 | 95.66% | 4.34% |
| All Indica | 650 | 91.69% | 8.31% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 291 | 88.32% | 11.68% |
| Indica II | 182 | 96.70% | 3.30% |
| Indica Intermediate | 177 | 92.09% | 7.91% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113946987 | G->A | LOC_Os11g25290(LOC_Os11g25290.1) | SNPs that introduce stop codons |