Detailed information of SNP:
|
SNP ID:
sf1113980463(Gbrowse)
Chromosome: chr11 Position: 13980463 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 78.67% | 21.33% |
| All Indica | 763 | 61.99% | 38.01% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 55.24% | 44.76% |
| Indica II | 207 | 66.67% | 33.33% |
| Indica Intermediate | 203 | 68.97% | 31.03% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113980463 | G->T | LOC_Os11g25340(LOC_Os11g25340.1) | Non-Synonymous SNP |