Detailed information of SNP:
|
SNP ID:
sf1113986338(Gbrowse)
Chromosome: chr11 Position: 13986338 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 65.37% | 34.63% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 469 | 4.48% | 95.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 317 | 5.36% | 94.64% |
| Tropical Japonica | 88 | 2.27% | 97.73% |
| Japonica Intermediate | 64 | 3.12% | 96.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1113986338 | G->C | LOC_Os11g25350(LOC_Os11g25350.1) | INTRON |