Detailed information of SNP:
|
SNP ID:
sf1114009759(Gbrowse)
Chromosome: chr11 Position: 14009759 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1176 | 88.95% | 11.05% |
| All Indica | 580 | 79.48% | 20.52% |
| All Japonica | 492 | 99.39% | 0.61% |
| Aus | 54 | 100.00% | 0.00% |
| Indica I | 273 | 86.81% | 13.19% |
| Indica II | 145 | 71.72% | 28.28% |
| Indica Intermediate | 162 | 74.07% | 25.93% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 36 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114009759 | T->C | LOC_Os11g25390(LOC_Os11g25390.1) | INTRON |