Detailed information of SNP:
|
SNP ID:
sf1114011284(Gbrowse)
Chromosome: chr11 Position: 14011284 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 95.80% | 4.20% |
| All Indica | 737 | 92.94% | 7.06% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 351 | 91.74% | 8.26% |
| Indica II | 194 | 94.33% | 5.67% |
| Indica Intermediate | 192 | 93.75% | 6.25% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114011284 | C->A | LOC_Os11g25390(LOC_Os11g25390.1) | INTRON |