Detailed information of SNP:
|
SNP ID:
sf1114021322(Gbrowse)
Chromosome: chr11 Position: 14021322 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 57.34% | 42.66% |
| All Indica | 792 | 88.38% | 11.62% |
| All Japonica | 496 | 3.43% | 96.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 88.17% | 11.83% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1114021322 | C->T | LOC_Os11g25400(LOC_Os11g25400.1) | Non-Synonymous SNP |